STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase. (397 aa)    
Predicted Functional Partners:
argI
Ornithine carbamoyltransferase 1; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.999
yqeA
Amino acid (carbamate) kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the carbamate kinase family.
 
  
 0.989
ygeW
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
 0.820
CEM62331.1
C4-dicarboxylate anaerobic carrier (fragment).
 
   
 0.621
CEM62332.1
Membrane hypothetical protein; No homology to any previously reported sequences.
 
   
 0.582
ycaM
Inner membrane transporter YcaM.
  
  
 0.569
bdhA
NADH-dependent butanol dehydrogenase A.
   
    0.565
CEM62445.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.565
CEM62446.1
NADH-dependent butanol dehydrogenase A (fragment).
   
    0.565
CEM62330.1
C4-dicarboxylate anaerobic carrier (fragment).
 
   
 0.522
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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