Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62338.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (120 aa)    
Predicted Functional Partners:
CEM62339.1
Tetratricopeptide repeat protein.
       0.800
mtaB
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.793
CEM63298.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.772
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
 
 0.715
CEM63223.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.698
CEM62341.1
Putative ribosomal subunit interface protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.513
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
     0.404
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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