Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM62348.1Ketopantoate reductase PanE/ApbA. (337 aa)    
Predicted Functional Partners:
CEM63404.1
Methylase involved in ubiquinone/menaquinone biosynthesis.
 
      0.857
CEM62349.1
Hypothetical protein; No homology to any previously reported sequences.
       0.527
ribBA
Riboflavin biosynthesis protein RibBA (Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
  
 0.526
azlD
Branched-chain amino acid transport protein AzlD.
   
    0.461
nadE
NAD+ synthase; Belongs to the NAD synthetase family.
  
  
 0.436
CEM62567.1
Citrate transporter.
 
     0.432
CEM60953.1
Fumarate reductase flavoprotein subunit.
 
     0.400
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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