Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM62528.1ABC transporter, substrate-binding protein, family 5. (555 aa)    
Predicted Functional Partners:
CEM61410.1
ABC transporter, permease protein (fragment).
 
 0.991
CEM61411.1
ABC transporter, permease protein.
 
 
 0.981
CEM63156.1
ABC transporter, permease protein.
 
 0.978
dppF
Dipeptide transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.968
CEM61408.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.966
oppD-2
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.964
CEM63155.1
ABC transporter, permease protein.
 
 
 0.961
CEM61412.1
ABC transporter, ATP-binding protein.
 
 
 0.956
oppB
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.920
CEM63157.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
     
  0.900
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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