Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ftnAFerritin; Iron-storage protein. (162 aa)    
Predicted Functional Partners:
dfx
Desulfoferrodoxin.
 
  
 0.868
ahpC
Alkyl hydroperoxide reductase, C22 subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.738
recQ
ATP-dependent DNA helicase RecQ.
 
  
   0.662
rpsP
30S ribosomal subunit protein S16; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.621
rpmC
50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.547
rplP
50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.541
CEM61966.1
Rubredoxin.
  
  
 0.519
cydA
Cytochrome bd ubiquinol oxidase subunit 1.
  
  
 0.459
CEM61090.1
Rubredoxin.
  
    0.440
CEM62543.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.425
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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