Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
melAAlpha-galactosidase. (440 aa)    
Predicted Functional Partners:
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.928
CEM60663.1
Glycosyl hydrolase family 20, catalytic domain protein.
  
  
  0.919
CEM61098.1
Glycosyl hydrolase family 35; Belongs to the glycosyl hydrolase 35 family.
    
 0.909
CEM60682.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
     
  0.900
CEM60392.1
Glycosyl hydrolase family 20, catalytic domain protein.
     
  0.900
mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
  0.900
CEM63205.1
ABC transporter, solute-binding protein.
 
     0.684
CEM62878.1
Glycosyl hydrolase family 38 N-terminal domain protein.
 
   
 0.649
CEM62548.1
AraC-like ligand binding domain protein.
 
   
 0.629
CEM62560.1
PTS system, beta-glucoside-specific, IIABC component.
  
  
 0.622
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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