Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yydKUncharacterized HTH-type transcriptional regulator YydK. (235 aa)    
Predicted Functional Partners:
CEM62560.1
PTS system, beta-glucoside-specific, IIABC component.
 
  
 0.859
CEM62179.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.681
bglA
Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 1 family.
 
   
 0.651
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.645
CEM61963.1
Putative Protein-N(pi)-phosphohistidine--sugar phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.597
CEM62559.1
Cof-like hydrolase.
 
     0.536
pdxK
Putative pyridoxine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.476
CEM60838.1
Transcriptional regulator, GntR family.
   
  
 0.418
CEM61659.1
DNA-binding helix-turn-helix protein.
   
  
 0.415
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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