Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62583.1Polysaccharide deacetylase. (768 aa)    
Predicted Functional Partners:
CEM61104.1
Sporulation and cell division repeat protein.
 
   
 0.784
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.774
CEM61172.1
Tetratricopeptide repeat protein.
 
   
 0.770
CEM61592.1
OmpA family protein.
  
     0.770
BamD
Tetratricopeptide repeat protein.
  
   
 0.767
CEM62070.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.766
CEM60801.1
Fibronectin type III domain protein.
  
     0.764
CEM62504.1
Tetratricopeptide repeat protein.
 
     0.764
CEM63036.1
Outer membrane lipoprotein carrier protein LolA.
 
     0.764
CEM61240.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.763
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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