Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM62601.1Efflux ABC transporter, permease protein. (408 aa)    
Predicted Functional Partners:
CEM62602.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.919
yvrO
Uncharacterized ABC transporter ATP-binding protein YvrO.
 
 
 0.867
CEM62612.1
ABC transporter, ATP-binding protein.
 
 
 0.820
CEM62609.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.786
tpd
34 kDa membrane antigen.
 
     0.784
CEM62611.1
FTR1 family protein.
 
     0.781
CEM62608.1
Efflux ABC transporter, permease protein.
  
     0.774
CEM61228.1
Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.685
lolD
Lipoprotein-releasing system ATP-binding protein LolD.
  
 
 0.487
CEM61226.1
Efflux ABC transporter, permease protein.
  
 
 0.487
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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