Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tpd34 kDa membrane antigen. (208 aa)    
Predicted Functional Partners:
CEM62611.1
FTR1 family protein.
 
  
 0.969
CEM62609.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.896
CEM62608.1
Efflux ABC transporter, permease protein.
 
     0.871
CEM62607.1
Efflux ABC transporter, permease protein.
 
     0.828
CEM62602.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
   0.816
yvrO
Uncharacterized ABC transporter ATP-binding protein YvrO.
 
     0.800
CEM62601.1
Efflux ABC transporter, permease protein.
 
     0.784
CEM62612.1
ABC transporter, ATP-binding protein.
 
     0.713
CEM60447.1
ABC transporter, solute-binding protein.
   
  
 0.403
CEM61347.1
ABC transporter, solute-binding protein.
   
  
 0.403
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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