CEM62612.1 protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM60619.1	CEM61412.1	TPHV1_10287	TPHV1_190019	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.993
CEM60619.1	CEM61413.1	TPHV1_10287	TPHV1_190020	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.976
CEM60619.1	CEM62612.1	TPHV1_10287	TPHV1_40115	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.883
CEM61225.1	CEM61226.1	TPHV1_160026	TPHV1_160027	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.851
CEM61225.1	CEM62612.1	TPHV1_160026	TPHV1_40115	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.975
CEM61226.1	CEM61225.1	TPHV1_160027	TPHV1_160026	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.851
CEM61226.1	CEM62601.1	TPHV1_160027	TPHV1_40104	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.487
CEM61226.1	CEM62607.1	TPHV1_160027	TPHV1_40110	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.723
CEM61226.1	CEM62608.1	TPHV1_160027	TPHV1_40111	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.593
CEM61226.1	CEM62612.1	TPHV1_160027	TPHV1_40115	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.974
CEM61412.1	CEM60619.1	TPHV1_190019	TPHV1_10287	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.993
CEM61412.1	CEM61413.1	TPHV1_190019	TPHV1_190020	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.989
CEM61412.1	CEM62612.1	TPHV1_190019	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.915
CEM61412.1	pstB	TPHV1_190019	TPHV1_120006	ABC transporter, ATP-binding protein.	Phosphate transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.900
CEM61413.1	CEM60619.1	TPHV1_190020	TPHV1_10287	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.976
CEM61413.1	CEM61412.1	TPHV1_190020	TPHV1_190019	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.989
CEM61413.1	CEM62612.1	TPHV1_190020	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.921
CEM61413.1	pstB	TPHV1_190020	TPHV1_120006	ABC transporter, ATP-binding protein.	Phosphate transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.	0.891
CEM61736.1	CEM62612.1	TPHV1_200026	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.877
CEM62601.1	CEM61226.1	TPHV1_40104	TPHV1_160027	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.487