CEM62612.1 protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEM62612.1

ABC transporter, ATP-binding protein. (224 aa)

Predicted Functional Partners:

CEM61225.1

0.978

CEM61226.1

0.978

CEM61413.1

0.922

CEM61412.1

0.915

CEM62607.1

0.899

CEM62608.1

0.888

CEM60619.1

0.882

CEM61736.1

0.879

CEM62601.1

0.843

CEM62611.1

0.812

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM60619.1	CEM61412.1	TPHV1_10287	TPHV1_190019	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.991
CEM60619.1	CEM61413.1	TPHV1_10287	TPHV1_190020	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.967
CEM60619.1	CEM62612.1	TPHV1_10287	TPHV1_40115	ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.882
CEM61225.1	CEM61226.1	TPHV1_160026	TPHV1_160027	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.870
CEM61225.1	CEM62612.1	TPHV1_160026	TPHV1_40115	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.978
CEM61226.1	CEM61225.1	TPHV1_160027	TPHV1_160026	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.870
CEM61226.1	CEM62601.1	TPHV1_160027	TPHV1_40104	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.552
CEM61226.1	CEM62607.1	TPHV1_160027	TPHV1_40110	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.820
CEM61226.1	CEM62608.1	TPHV1_160027	TPHV1_40111	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.645
CEM61226.1	CEM62611.1	TPHV1_160027	TPHV1_40114	Efflux ABC transporter, permease protein.	FTR1 family protein.	0.496
CEM61226.1	CEM62612.1	TPHV1_160027	TPHV1_40115	Efflux ABC transporter, permease protein.	ABC transporter, ATP-binding protein.	0.978
CEM61412.1	CEM60619.1	TPHV1_190019	TPHV1_10287	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.991
CEM61412.1	CEM61413.1	TPHV1_190019	TPHV1_190020	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.988
CEM61412.1	CEM62612.1	TPHV1_190019	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.915
CEM61413.1	CEM60619.1	TPHV1_190020	TPHV1_10287	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.967
CEM61413.1	CEM61412.1	TPHV1_190020	TPHV1_190019	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.988
CEM61413.1	CEM62612.1	TPHV1_190020	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.922
CEM61736.1	CEM62612.1	TPHV1_200026	TPHV1_40115	ABC transporter, ATP-binding protein.	ABC transporter, ATP-binding protein.	0.879
CEM62601.1	CEM61226.1	TPHV1_40104	TPHV1_160027	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.552
CEM62601.1	CEM62607.1	TPHV1_40104	TPHV1_40110	Efflux ABC transporter, permease protein.	Efflux ABC transporter, permease protein.	0.430