Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62616.1ABC transporter, solute-binding protein. (478 aa)    
Predicted Functional Partners:
CEM61348.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.695
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.695
malQ
4-alpha-glucanotransferase.
       0.560
CEM60649.1
ABC transporter, permease protein.
  
 
 0.532
CEM61106.1
ABC transporter, permease protein.
  
 
 0.532
amyD
Putative starch degradation products transport system permease protein AmyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.532
CEM62309.1
ABC transporter, permease protein.
  
 
 0.532
CEM63055.1
ABC transporter, permease protein.
  
 
 0.532
CEM63233.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.532
CEM63237.1
ABC transporter, permease protein.
  
 
 0.532
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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