Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
CEM62625.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (181 aa)    
Predicted Functional Partners:
CEM62626.1
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.982
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
  
 0.970
CEM62627.1
Stage II sporulation protein E.
  
 
 0.953
whiG
RNA polymerase sigma factor WhiG; Belongs to the sigma-70 factor family.
  
 
 0.945
CEM61826.1
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.938
CEM62362.1
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.938
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.904
flgK
Flagellar hook-associated protein FlgK.
   
    0.904
CEM62049.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.904
motA
Motility protein A.
   
    0.904
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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