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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM62626.1Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. (112 aa)    
Predicted Functional Partners:
CEM62625.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.982
CEM62627.1
Stage II sporulation protein E.
 
 
 0.979
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
  
 0.917
CEM61825.1
Stage II sporulation protein E (modular protein).
 
 
 0.902
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
   0.897
CEM61824.1
Stage II sporulation protein E.
 
 
 0.896
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
  
 0.823
CEM60926.1
Stage II sporulation protein E.
 
 
 0.804
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
    0.787
CEM63082.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.776
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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