Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62630.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (223 aa)    
Predicted Functional Partners:
CEM62629.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.956
CEM62631.1
Tetratricopeptide repeat protein.
 
     0.827
CEM62628.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.732
CEM62632.1
Tetratricopeptide repeat protein.
       0.566
CEM62633.1
Tetratricopeptide repeat protein (modular protein).
       0.563
CEM61580.1
Alpha amylase, catalytic domain protein.
  
     0.493
CEM62627.1
Stage II sporulation protein E.
 
     0.486
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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