Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62633.1Tetratricopeptide repeat protein (modular protein). (1000 aa)    
Predicted Functional Partners:
CEM62632.1
Tetratricopeptide repeat protein.
 
 
 0.930
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
 
 0.863
CEM63457.1
Tetratricopeptide repeat protein.
 
 
 
 0.838
CEM63127.1
Tetratricopeptide repeat protein.
 
 
 
 0.815
CEM61564.1
Tetratricopeptide repeat protein.
 
 
 
 0.811
CEM61867.1
Tetratricopeptide repeat protein.
 
 
 0.802
CEM61600.1
Tetratricopeptide repeat protein.
 
 
 
 0.791
CEM62392.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
 
 0.757
CEM62504.1
Tetratricopeptide repeat protein.
 
   
 0.741
CEM60933.1
WD domain, G-beta repeat protein.
 
 0.736
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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