Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM62644.1Peptidase, U32 family. (432 aa)    
Predicted Functional Partners:
CEM62643.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
CEM62645.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.559
CEM60437.1
Phosphoribulokinase/uridine kinase family protein.
  
    0.499
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.470
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
   
    0.460
CEM62646.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.426
CEM63087.1
Pyridine nucleotide-disulfide oxidoreductase (fragment).
  
   0.415
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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