Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62698.1Trypsin. (406 aa)    
Predicted Functional Partners:
CEM62038.1
7TM diverse intracellular signaling (fragment).
  
  
 0.767
CEM62633.1
Tetratricopeptide repeat protein (modular protein).
  
 
 0.634
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
 
 
 0.632
CEM61302.1
PspC domain protein.
  
  
 0.623
FlgF
Putative flagellar basal-body rod protein FlgF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
   0.617
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.612
CEM60657.1
LysM domain protein.
  
 
 0.604
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
  
 0.595
CEM63123.1
Ankyrin repeat protein.
  
 0.562
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.533
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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