Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM62742.1Tetratricopeptide repeat protein. (1091 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.695
CEM61060.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.561
CEM62743.1
Isoamylase N-terminal domain protein.
       0.529
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
    
 
 0.505
CEM62817.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.480
CEM62038.1
7TM diverse intracellular signaling (fragment).
    
 
 0.462
CEM61212.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
    
   0.415
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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