Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yufOUncharacterized ABC transporter ATP-binding protein YufO. (511 aa)    
Predicted Functional Partners:
yufP
Uncharacterized ABC transporter permease protein YufP; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
yufQ
Uncharacterized ABC transporter permease protein YufQ; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
CEM62916.1
Basic membrane protein.
 
 
 0.994
CEM62507.1
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.937
CEM62508.1
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.926
tpn-2
Membrane lipoprotein TpN38(b).
 
  
 0.923
CEM62509.1
Branched-chain amino acid ABC transporter, permease protein.
 
  
 0.906
CEM62903.1
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
      0.823
rbsC-2
D-ribose transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
      0.626
ygaF
Putative peroxiredoxin YgaF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.438
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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