Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEM62806.1 | CEM62848.1 | TPHV1_50066 | TPHV1_50108 | Putative NADPH-flavin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the flavin oxidoreductase frp family. | Riboflavin kinase. | 0.906 |
CEM62806.1 | aphA | TPHV1_50066 | TPHV1_30033 | Putative NADPH-flavin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the flavin oxidoreductase frp family. | Class B acid phosphatase. | 0.900 |
CEM62845.1 | CEM62848.1 | TPHV1_50105 | TPHV1_50108 | Hypothetical protein; No homology to any previously reported sequences. | Riboflavin kinase. | 0.732 |
CEM62845.1 | rbfA | TPHV1_50105 | TPHV1_50106 | Hypothetical protein; No homology to any previously reported sequences. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.732 |
CEM62845.1 | rpsO | TPHV1_50105 | TPHV1_50109 | Hypothetical protein; No homology to any previously reported sequences. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.732 |
CEM62845.1 | truB | TPHV1_50105 | TPHV1_50107 | Hypothetical protein; No homology to any previously reported sequences. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.732 |
CEM62848.1 | CEM62806.1 | TPHV1_50108 | TPHV1_50066 | Riboflavin kinase. | Putative NADPH-flavin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the flavin oxidoreductase frp family. | 0.906 |
CEM62848.1 | CEM62845.1 | TPHV1_50108 | TPHV1_50105 | Riboflavin kinase. | Hypothetical protein; No homology to any previously reported sequences. | 0.732 |
CEM62848.1 | aphA | TPHV1_50108 | TPHV1_30033 | Riboflavin kinase. | Class B acid phosphatase. | 0.900 |
CEM62848.1 | coaBC | TPHV1_50108 | TPHV1_40182 | Riboflavin kinase. | Coenzyme A biosynthesis bifunctional protein CoaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.667 |
CEM62848.1 | rbfA | TPHV1_50108 | TPHV1_50106 | Riboflavin kinase. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.867 |
CEM62848.1 | ribD | TPHV1_50108 | TPHV1_70109 | Riboflavin kinase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.725 |
CEM62848.1 | ribE | TPHV1_50108 | TPHV1_70105 | Riboflavin kinase. | Riboflavin synthase beta chain; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.887 |
CEM62848.1 | ribE-2 | TPHV1_50108 | TPHV1_70108 | Riboflavin kinase. | Riboflavin synthase. | 0.940 |
CEM62848.1 | rpsO | TPHV1_50108 | TPHV1_50109 | Riboflavin kinase. | 30S ribosomal subunit protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.848 |
CEM62848.1 | truB | TPHV1_50108 | TPHV1_50107 | Riboflavin kinase. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.986 |
aphA | CEM62806.1 | TPHV1_30033 | TPHV1_50066 | Class B acid phosphatase. | Putative NADPH-flavin oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the flavin oxidoreductase frp family. | 0.900 |
aphA | CEM62848.1 | TPHV1_30033 | TPHV1_50108 | Class B acid phosphatase. | Riboflavin kinase. | 0.900 |
aphA | ribE-2 | TPHV1_30033 | TPHV1_70108 | Class B acid phosphatase. | Riboflavin synthase. | 0.900 |
coaBC | CEM62848.1 | TPHV1_40182 | TPHV1_50108 | Coenzyme A biosynthesis bifunctional protein CoaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | Riboflavin kinase. | 0.667 |
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