Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM62875.1Transcriptional regulator, TetR family. (234 aa)    
Predicted Functional Partners:
CEM60999.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.689
CEM62876.1
ABC transporter, ATP-binding protein.
 
     0.681
CEM62877.1
ABC transporter, ATP-binding protein.
 
     0.671
CEM61417.1
Putative ATP synthase F0, A subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.650
CEM61416.1
ABC transporter, ATP-binding protein.
  
     0.624
CEM60990.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
     0.590
CEM62874.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.558
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.516
CEM62708.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.507
CEM62888.1
ABC transporter, ATP-binding/permease protein.
  
     0.496
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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