Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM62887.1Lipid A export ATP-binding/permease protein MsbA. (576 aa)    
Predicted Functional Partners:
CEM62888.1
ABC transporter, ATP-binding/permease protein.
 
    
0.812
potA-2
Polyamine transporter subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.806
CEM60999.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.769
CEM60990.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
     0.728
CEM62889.1
Transcriptional regulator, TetR family.
 
     0.691
CEM61482.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.671
CEM63027.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.666
CEM63400.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.666
CEM63399.1
Cobalt transport protein.
  
     0.649
CEM61480.1
Cobalt transport protein.
  
     0.525
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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