Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM62889.1Transcriptional regulator, TetR family. (200 aa)    
Predicted Functional Partners:
CEM62887.1
Lipid A export ATP-binding/permease protein MsbA.
 
     0.691
CEM62888.1
ABC transporter, ATP-binding/permease protein.
       0.651
CEM63402.1
Transcriptional regulator, TetR family.
  
     0.537
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.516
CEM61482.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.431
CEM63412.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.431
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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