STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM62965.1Tetratricopeptide repeat protein. (351 aa)    
Predicted Functional Partners:
CEM62964.1
LysM domain protein.
     
 0.814
CEM62963.1
OmpA family protein.
   
   0.649
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.576
CEM60933.1
WD domain, G-beta repeat protein.
  
 0.567
CEM62392.1
Membrane hypothetical protein; No homology to any previously reported sequences.
  
 
 0.545
CEM62966.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.542
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.534
CEM63175.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
 
 0.524
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.482
CEM62587.1
Putative ankyrin repeat-containing protein TP_0502; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.477
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.