Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63036.1Outer membrane lipoprotein carrier protein LolA. (230 aa)    
Predicted Functional Partners:
CEM61592.1
OmpA family protein.
 
 
 0.844
CEM61816.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.805
CEM62513.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.781
BamD
Tetratricopeptide repeat protein.
 
    0.777
CEM61762.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.776
CEM60801.1
Fibronectin type III domain protein.
  
     0.773
CEM61172.1
Tetratricopeptide repeat protein.
 
     0.773
CEM62339.1
Tetratricopeptide repeat protein.
 
     0.766
CEM62504.1
Tetratricopeptide repeat protein.
 
     0.766
CEM62583.1
Polysaccharide deacetylase.
 
     0.764
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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