CEM63056.1 protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CEM63056.1

ABC transporter, solute-binding protein. (418 aa)

Predicted Functional Partners:

CEM63054.1

0.993

CEM63055.1

0.989

ycjV

0.936

CEM62308.1

0.919

CEM62309.1

0.918

CEM62310.1

0.908

CEM61348.1

0.695

amyD

0.600

CEM61106.1

0.598

CEM63205.1

0.566

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM61106.1	CEM61348.1	TPHV1_140054	TPHV1_180009	ABC transporter, permease protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.813
CEM61106.1	CEM62308.1	TPHV1_140054	TPHV1_30203	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.625
CEM61106.1	CEM62310.1	TPHV1_140054	TPHV1_30205	ABC transporter, permease protein.	ABC transporter, permease protein.	0.898
CEM61106.1	CEM63054.1	TPHV1_140054	TPHV1_60042	ABC transporter, permease protein.	ABC transporter, permease protein.	0.895
CEM61106.1	CEM63056.1	TPHV1_140054	TPHV1_60044	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.598
CEM61106.1	CEM63205.1	TPHV1_140054	TPHV1_70068	ABC transporter, permease protein.	ABC transporter, solute-binding protein.	0.532
CEM61106.1	ycjV	TPHV1_140054	TPHV1_50080	ABC transporter, permease protein.	Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.946
CEM61348.1	CEM61106.1	TPHV1_180009	TPHV1_140054	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.813
CEM61348.1	CEM62308.1	TPHV1_180009	TPHV1_30203	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.695
CEM61348.1	CEM62309.1	TPHV1_180009	TPHV1_30204	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.787
CEM61348.1	CEM62310.1	TPHV1_180009	TPHV1_30205	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.683
CEM61348.1	CEM63054.1	TPHV1_180009	TPHV1_60042	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.729
CEM61348.1	CEM63055.1	TPHV1_180009	TPHV1_60043	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.787
CEM61348.1	CEM63056.1	TPHV1_180009	TPHV1_60044	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.695
CEM61348.1	CEM63205.1	TPHV1_180009	TPHV1_70068	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.695
CEM61348.1	amyD	TPHV1_180009	TPHV1_210011	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative starch degradation products transport system permease protein AmyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.787
CEM62308.1	CEM61106.1	TPHV1_30203	TPHV1_140054	ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.625
CEM62308.1	CEM61348.1	TPHV1_30203	TPHV1_180009	ABC transporter, solute-binding protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.695
CEM62308.1	CEM62309.1	TPHV1_30203	TPHV1_30204	ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.976
CEM62308.1	CEM62310.1	TPHV1_30203	TPHV1_30205	ABC transporter, solute-binding protein.	ABC transporter, permease protein.	0.985