Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM63075.1Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function. (257 aa)    
Predicted Functional Partners:
CEM63074.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.964
CEM63073.1
Transcriptional regulator, TetR family.
     
 0.685
CEM63072.1
Hypothetical protein; No homology to any previously reported sequences.
       0.588
CEM63076.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.572
CEM62564.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
    
   0.532
CEM63214.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.532
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase SlyD.
 
     0.506
CEM63065.1
Efflux ABC transporter, permease protein.
 
 
 
 0.493
CEM61226.1
Efflux ABC transporter, permease protein.
   
 
 0.489
CEM60867.1
Divergent polysaccharide deacetylase.
  
     0.446
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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