Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63085.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (67 aa)    
Predicted Functional Partners:
CEM63088.1
Hypothetical protein; No homology to any previously reported sequences.
 
 0.998
CEM63087.1
Pyridine nucleotide-disulfide oxidoreductase (fragment).
 
 0.996
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.993
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.993
CEM61478.1
Pyridine nucleotide-disulfide oxidoreductase (modular protein).
   
 
 0.849
CEM63086.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
CEM62593.1
Ferredoxin.
   
 
 0.737
CEM61966.1
Rubredoxin.
  
 
 0.640
CEM63147.1
Cys/Met metabolism PLP-dependent enzyme (modular protein).
  
    0.634
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.615
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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