hbpB-2 protein (Treponema phagedenis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hbpB-2

Hemin-binding protein B. (399 aa)

Predicted Functional Partners:

troB

0.746

CEM61639.1

0.746

troD

0.662

troC

0.662

CEM61638.1

0.662

rpmE

0.625

folE

0.542

CEM61730.1

0.539

CEM63164.1

0.517

hbpB

0.505

Your Current Organism:

Treponema phagedenis

NCBI taxonomy Id: 162
Other names: T. phagedenis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEM61638.1	CEM61639.1	TPHV1_20175	TPHV1_20176	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.997
CEM61638.1	CEM61730.1	TPHV1_20175	TPHV1_200020	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.435
CEM61638.1	hbpB	TPHV1_20175	TPHV1_60099	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.662
CEM61638.1	hbpB-2	TPHV1_20175	TPHV1_60100	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.662
CEM61638.1	troB	TPHV1_20175	TPHV1_100076	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system ATP-binding protein TroB.	0.932
CEM61638.1	troC	TPHV1_20175	TPHV1_100075	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroC.	0.492
CEM61638.1	troD	TPHV1_20175	TPHV1_100074	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroD.	0.481
CEM61639.1	CEM61638.1	TPHV1_20176	TPHV1_20175	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.997
CEM61639.1	CEM61730.1	TPHV1_20176	TPHV1_200020	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.450
CEM61639.1	hbpB	TPHV1_20176	TPHV1_60099	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.746
CEM61639.1	hbpB-2	TPHV1_20176	TPHV1_60100	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.746
CEM61639.1	troC	TPHV1_20176	TPHV1_100075	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroC.	0.907
CEM61639.1	troD	TPHV1_20176	TPHV1_100074	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Zinc transport system membrane protein TroD.	0.903
CEM61730.1	CEM61638.1	TPHV1_200020	TPHV1_20175	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.435
CEM61730.1	CEM61639.1	TPHV1_200020	TPHV1_20176	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.450
CEM61730.1	folE	TPHV1_200020	TPHV1_290006	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	GTP cyclohydrolase FolE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	0.790
CEM61730.1	hbpB	TPHV1_200020	TPHV1_60099	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.539
CEM61730.1	hbpB-2	TPHV1_200020	TPHV1_60100	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Hemin-binding protein B.	0.539
CEM61730.1	rpmE	TPHV1_200020	TPHV1_70089	Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	50S ribosomal subunit protein L31; Binds the 23S rRNA.	0.493
CEM63164.1	folE	TPHV1_70027	TPHV1_290006	CobW/P47K family protein.	GTP cyclohydrolase FolE2; Converts GTP to 7,8-dihydroneopterin triphosphate.	0.755