STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbpB-2Hemin-binding protein B. (399 aa)    
Predicted Functional Partners:
troB
Zinc transport system ATP-binding protein TroB.
  
  
 0.723
CEM61639.1
Putative metal transport system ATP-binding protein TP_0035; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.723
troD
Zinc transport system membrane protein TroD.
  
  
 0.630
troC
Zinc transport system membrane protein TroC.
  
  
 0.630
CEM61638.1
Putative metal transport system membrane protein TP_0036; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.630
rpmE
50S ribosomal subunit protein L31; Binds the 23S rRNA.
  
  
 0.607
hbpB
Hemin-binding protein B.
      
0.505
CEM61730.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.465
CEM63164.1
CobW/P47K family protein.
  
  
 0.433
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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