STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63118.1PAS domain S-box protein. (409 aa)    
Predicted Functional Partners:
atoC
Fused response regulator of ato opeon, in two-component system with AtoS: response regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.957
cheR
CheR methyltransferase, SAM binding domain protein.
      0.890
CEM60875.1
Response regulator receiver domain protein.
 
 
 0.827
CEM63116.1
Thiamine diphosphokinase.
       0.773
cheY
Chemotaxis protein CheY.
 
     0.741
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
 
 
0.666
CEM61210.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 
 0.642
CEM62038.1
7TM diverse intracellular signaling (fragment).
   
 
 0.583
CEM63119.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.555
CEM61785.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
    
 0.501
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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