STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63118.1PAS domain S-box protein. (409 aa)    
Predicted Functional Partners:
atoC
Fused response regulator of ato opeon, in two-component system with AtoS: response regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.950
cheR
CheR methyltransferase, SAM binding domain protein.
      0.889
CEM60875.1
Response regulator receiver domain protein.
 
 
 
 0.815
CEM63116.1
Thiamine diphosphokinase.
       0.773
cheY
Chemotaxis protein CheY.
 
     0.741
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
 
 
0.667
CEM61210.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 
 0.615
CEM61007.1
Response regulator receiver domain protein.
    
 0.562
CEM63119.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.555
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
  
 0.532
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
Server load: medium (44%) [HD]