STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63147.1Cys/Met metabolism PLP-dependent enzyme (modular protein). (429 aa)    
Predicted Functional Partners:
metA
Aspartokinase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
 
 0.998
CEM63143.1
Homoserine dehydrogenase.
 
 
 0.959
hly
Hemolysin.
   
 0.933
ilvA
Threonine ammonia-lyase.
   
 
  0.808
asd
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
  
 0.663
CEM63087.1
Pyridine nucleotide-disulfide oxidoreductase (fragment).
  
  
 0.662
CEM63085.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.608
CEM63088.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.608
sudA
Sulfide dehydrogenase subunit alpha.
  
  
 0.602
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.558
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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