Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppFDipeptide transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
CEM63155.1
ABC transporter, permease protein.
 0.999
CEM63156.1
ABC transporter, permease protein.
 
 0.997
CEM61411.1
ABC transporter, permease protein.
 0.994
CEM60619.1
ABC transporter, permease protein.
 
 0.992
CEM61410.1
ABC transporter, permease protein (fragment).
 
 0.991
oppD-2
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
  
 
0.979
CEM62528.1
ABC transporter, substrate-binding protein, family 5.
 
 
 0.968
CEM61408.1
ABC transporter, substrate-binding protein, family 5.
 
 0.964
CEM63157.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
  0.964
oppB
Oligopeptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.947
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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