Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbpDPutative RNA-binding protein RbpD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (88 aa)    
Predicted Functional Partners:
CEM62499.1
Helicase C-terminal domain protein.
    
 0.804
CEM63178.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.750
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
   
 0.747
CEM60933.1
WD domain, G-beta repeat protein.
    
 0.732
CEM61240.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
    
 0.727
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.682
rpoZ
DNA-directed RNA polymerase subunit omega.
   
 
 0.669
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.655
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
   0.633
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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