STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbpDPutative RNA-binding protein RbpD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (88 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.823
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.815
rpoZ
DNA-directed RNA polymerase subunit omega.
   
 0.805
CEM62499.1
Helicase C-terminal domain protein.
    
 0.796
CEM63178.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
CEM60933.1
WD domain, G-beta repeat protein.
    
 0.750
CEM61240.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
    
 0.750
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.694
CEM60452.1
Peptidyl-prolyl cis-trans isomerase.
   
 0.614
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
   0.572
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.