Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM63205.1ABC transporter, solute-binding protein. (428 aa)    
Predicted Functional Partners:
CEM62308.1
ABC transporter, solute-binding protein.
  
     0.703
CEM61348.1
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.695
ycjV
Putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.695
melA
Alpha-galactosidase.
 
     0.684
palH
Alpha-glucosidase.
 
     0.674
CEM62313.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   0.669
CEM62309.1
ABC transporter, permease protein.
 
 
 0.621
CEM61105.1
ABC transporter, solute-binding protein.
  
     0.592
ytcP
Putative ABC transporter permease protein YtcP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   0.578
lplC
Protein LplC.
 
   0.571
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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