Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CEM63210.1Cyclic nucleotide-binding domain protein. (219 aa)    
Predicted Functional Partners:
CEM60914.1
Cyclic nucleotide-binding domain protein.
  
  
  0.955
CEM63211.1
Cyclic nucleotide-binding domain protein.
    
0.936
CEM61588.1
Adenylate/guanylate cyclase catalytic domain protein.
 
 
 0.816
CEM62037.1
7TM diverse intracellular signaling.
 
 
 0.770
CEM62039.1
7TM diverse intracellular signaling (fragment).
 
 
 0.768
CEM63213.1
ATP-grasp domain protein.
 
 
   0.628
CEM61976.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.569
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
 
 0.563
CEM63212.1
PHP domain protein.
       0.555
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.548
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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