Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM63214.1N-acetylmuramoyl-L-alanine amidase. (380 aa)    
Predicted Functional Partners:
CEM63215.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
       0.818
CEM63213.1
ATP-grasp domain protein.
       0.794
CEM62048.1
LysM domain protein.
 
 
 0.732
CEM63212.1
PHP domain protein.
       0.730
flaA
Flagellar filament outer layer protein.
       0.634
CEM63036.1
Outer membrane lipoprotein carrier protein LolA.
  
 
   0.598
CEM62167.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.555
rlpA
Sporulation and cell division repeat protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.549
CEM63211.1
Cyclic nucleotide-binding domain protein.
     
 0.546
CEM60912.1
Peptidase, S54 family.
   
   0.543
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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