Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63227.1Nodulation efficiency protein D. (157 aa)    
Predicted Functional Partners:
CEM62302.1
SPFH/Band 7/PHB domain protein.
 
 
 0.868
CEM62301.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.865
rpmE
50S ribosomal subunit protein L31; Binds the 23S rRNA.
       0.723
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
 
 0.501
CEM61295.1
SPFH/Band 7/PHB domain protein.
  
 
 0.435
hflC
Protein HflC; HflC and HflK could regulate a protease.
  
 
 0.435
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.402
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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