Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEM63251.1Transporter, MotA/TolQ/ExbB proton channel family protein. (229 aa)    
Predicted Functional Partners:
CEM63252.1
Transport energizing protein, ExbD/TolR family.
 
 
 0.998
CEM63253.1
TonB-dependent receptor.
 
 
 0.989
CEM62461.1
TonB-dependent receptor plug domain protein.
 
  
 0.813
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.797
yaeT
Outer membrane protein assembly complex, YaeT protein.
 
   
 0.774
CEM62852.1
Permease, YjgP/YjgQ family.
  
     0.705
CEM62853.1
Permease, YjgP/YjgQ family.
  
     0.695
CEM63254.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.675
CEM62985.1
Tetratricopeptide repeat protein.
 
    0.551
ribBA
Riboflavin biosynthesis protein RibBA (Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.526
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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