STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63252.1Transport energizing protein, ExbD/TolR family. (133 aa)    
Predicted Functional Partners:
CEM63251.1
Transporter, MotA/TolQ/ExbB proton channel family protein.
 
 
 0.998
CEM63253.1
TonB-dependent receptor.
 
 
 0.993
CEM62461.1
TonB-dependent receptor plug domain protein.
 
  
 0.802
lptB
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.691
CEM63254.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.675
ribBA
Riboflavin biosynthesis protein RibBA (Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.617
CEM62513.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.590
CEM62816.1
Acyl-CoA thioester hydrolase, YbgC/YbaW family.
 
  
 0.515
yaeT
Outer membrane protein assembly complex, YaeT protein.
 
     0.493
tpn
Outer membrane protein Tpn50.
  
 
 
 0.483
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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