STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63295.1PSP1 C-terminal domain protein. (307 aa)    
Predicted Functional Partners:
CEM63296.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.768
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.760
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.743
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.695
cheR
CheR methyltransferase, SAM binding domain protein.
    
   0.689
flaB-2
Flagellar filament 31 kDa core protein; Component of the core of the flagella. Belongs to the bacterial flagellin family.
    
   0.689
CEM63082.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
   0.689
flgD
Flagellar hook capping protein.
    
   0.689
CEM63298.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
     
 0.573
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
    0.539
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.