Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63322.1HD domain protein. (418 aa)    
Predicted Functional Partners:
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
 
 
 0.986
CEM60911.1
Diguanylate cyclase (GGDEF) domain protein.
 
 0.942
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
 0.894
CEM61785.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
 
  
 0.886
CEM61102.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.851
CEM61101.1
Diguanylate cyclase (GGDEF) domain protein.
 
 
 0.850
CEM61007.1
Response regulator receiver domain protein.
 
 0.846
CEM61655.1
HD domain protein.
 
   
 0.789
CEM61178.1
Metallo-beta-lactamase domain protein.
     0.785
CEM61588.1
Adenylate/guanylate cyclase catalytic domain protein.
 
 
 0.736
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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