STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEM63346.1HAMP domain protein (fragment). (240 aa)    
Predicted Functional Partners:
cheR-2
CheR methyltransferase, SAM binding domain protein.
  
 
 0.825
CEM63345.1
HAMP domain protein (fragment).
      0.757
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
 
 0.629
cheA
Chemotaxis protein CheA.
  
 
 0.565
CEM63344.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.521
cheW
Chemotaxis protein CheW.
  
 
 0.520
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
 
 0.504
CEM63343.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.483
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 
 0.463
CEM62539.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.458
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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