Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63346.1HAMP domain protein (fragment). (240 aa)    
Predicted Functional Partners:
CEM63345.1
HAMP domain protein (fragment).
      0.757
cheR-2
CheR methyltransferase, SAM binding domain protein.
  
 
 0.732
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
 
 0.602
CEM63344.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.521
cheA
Chemotaxis protein CheA.
  
 
 0.519
cheW
Chemotaxis protein CheW.
  
 
 0.502
CEM63343.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.483
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
  
 
 0.473
CEM62539.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.458
CEM62739.1
Sel1 repeat protein (fragment).
  
     0.408
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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