Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CEM63407.1FR47-like protein. (214 aa)    
Predicted Functional Partners:
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.747
CEM63408.1
Fic family protein.
 
     0.689
CEM63406.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.554
CEM61942.1
Cytidylyltransferase.
  
  
 0.531
CEM61784.1
Diguanylate cyclase (GGDEF) domain protein (fragment).
  
  
 0.441
CEM63405.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.430
msrB
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.427
CEM61310.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (modular protein).
   
 
 0.421
CEM61478.1
Pyridine nucleotide-disulfide oxidoreductase (modular protein).
 
   
 0.417
CEM62891.1
Inosine 5-monophosphate dehydrogenase.
   
 
 0.405
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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