Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63419.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (251 aa)    
Predicted Functional Partners:
CEM63418.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
      0.965
CEM63417.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.588
CEM63420.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.551
CEM63416.1
DNA topoisomerase (fragment).
 
     0.507
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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