Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63436.1Recombinase. (590 aa)    
Predicted Functional Partners:
repA
Replication initiator protein A, N-terminal domain protein.
  
     0.725
CEM63441.1
Resolvase, N-terminal domain protein (fragment).
 
     0.543
CEM63435.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.539
CEM62432.1
Cytochrome C biogenesis protein transmembrane region.
   
    0.529
CEM63421.1
Helicase (fragment).
     0.434
CEM63412.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.428
CEM62223.1
Putative phage virion morphogenesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.403
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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