Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEM63438.1AAA-like domain protein. (809 aa)    
Predicted Functional Partners:
CEM63440.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.887
CEM63415.1
TraG/TraD/VirD4 bacterial conjugation protein (fragment).
 
  
 0.867
CEM63422.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.824
CEM63437.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.802
CEM63416.1
DNA topoisomerase (fragment).
 
  
 0.791
CEM61495.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.763
CEM61497.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.763
CEM62418.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.763
CEM63421.1
Helicase (fragment).
  
     0.725
CEM61826.1
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
    0.581
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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