Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CEM63464.1TRAP transporter, DctQ-like membrane protein. (162 aa)    
Predicted Functional Partners:
CEM60348.1
TRAP transporter, DctM subunit.
 
 0.986
CEM63463.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.971
CEM63465.1
TRAP transporter solute receptor, DctP family.
 
  
 0.969
CEM61012.1
TRAP transporter, DctQ-like membrane protein.
  
  
 
0.920
CEM61011.1
TRAP transporter, DctM subunit.
 
 
 0.879
CEM61013.1
Bacterial extracellular solute-binding protein, family 7.
 
  
 0.868
uxaC
Uronate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.780
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.734
CEM63462.1
Mannitol dehydrogenase domain protein.
       0.734
CEM60349.1
Bacterial extracellular solute-binding protein, family 7.
 
  
 0.698
Your Current Organism:
Treponema phagedenis
NCBI taxonomy Id: 162
Other names: T. phagedenis
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