STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI02882.1PFAM: PAP2 superfamily. (342 aa)    
Predicted Functional Partners:
AKH99275.1
Cytochrome P450; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Cytochrome P450.
  
 0.646
rplF
Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.604
AKI01030.1
PFAM: Cytochrome P450.
   
 0.580
AKI02849.1
PFAM: Cytochrome P450.
   
 0.580
AKI01517.1
PFAM: Putative Flp pilus-assembly TadE/G-like.
  
     0.579
hisE
PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase.
       0.532
coaA
PFAM: Phosphoribulokinase / Uridine kinase family; TIGRFAM: pantothenate kinase, bacterial type.
       0.526
AKI01902.1
PFAM: Sulfatase.
 
   
 0.492
AKI02762.1
PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
 
     0.487
AKI01341.1
PFAM: von Willebrand factor type A domain; Putative Flp pilus-assembly TadE/G-like.
  
     0.486
Your Current Organism:
Hoeflea sp. IMCC20628
NCBI taxonomy Id: 1620421
Other names: H. sp. IMCC20628
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.