STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exoAExodeoxyribonuclease. (251 aa)    
Predicted Functional Partners:
nth
Endonuclease III.
 
 0.993
dnaN
DNA polymerase III subunit beta.
   
 0.963
polA
DNA polymerase I.
  
 0.961
SCI05800.1
Protein of uncharacterised function (DUF2400).
  
 0.939
ung
Uracil-DNA glycosylase.
   
 0.933
tadA_1
tRNA-specific adenosine deaminase.
   
 
 0.884
SCG94744.1
ATP-dependent transcriptional regulator.
    
  0.877
truB
tRNA pseudouridine synthase B.
  
 
  0.872
dgkA
Undecaprenol kinase.
       0.836
rluB
Ribosomal large subunit pseudouridine synthase B.
  
    0.768
Your Current Organism:
uncultured Bacteroides sp.
NCBI taxonomy Id: 162156
Other names: u. Bacteroides sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.